Rather than pile on edits I'm going to double post.
(edit from previous post) I just glanced your first edit. Not a clue which version mine is, it just says Phantasy Star II.bin. So go for whichever (U) seems more common.
-- If you can make all party members available from the outset a rise of starting cash would be helpful, say 1,000 meseta.
-- Moon Dew and Star Mist could be purchasable at certain places (the first city's fine) in order to save the player some hassle. I'm thinking 20k and 10k meseta.
-- The Whip, which is in Zema, could have its attack value raised to 35. I believe it's 20 originally. This is a very marginal weapon.
-- Perhaps make Shift castable on other characters or let Shir learn it.
-- Enable Nei to wear all crowns, capes, and boots.